Difference between revisions of "An initial path towards statistical analysis"
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'''Start here with your data! This is your first question.''' | '''Start here with your data! This is your first question.''' | ||
| − | <imagemap>Image:Several Variables, no clear dependencies - First Step.png|center| | + | <imagemap>Image:Several Variables, no clear dependencies - First Step.png|center|500px |
poly 332 432 0 756 328 1080 656 756 [[An_initial_path_towards_statistical_analysis#Multivariate_statistics|Multivariate Statistics]] | poly 332 432 0 756 328 1080 656 756 [[An_initial_path_towards_statistical_analysis#Multivariate_statistics|Multivariate Statistics]] | ||
poly 1068 436 744 752 1060 1080 1380 752 [[An_initial_path_towards_statistical_analysis#Univariate_statistics|Univariate Statistics]] | poly 1068 436 744 752 1060 1080 1380 752 [[An_initial_path_towards_statistical_analysis#Univariate_statistics|Univariate Statistics]] | ||
| Line 143: | Line 143: | ||
= Multivariate statistics = | = Multivariate statistics = | ||
| − | <imagemap>Image:Statistics Flowchart - Clustering, Networks, Ordination.png|center| | + | <imagemap>Image:Statistics Flowchart - Clustering, Networks, Ordination.png|center|500px| |
poly 328 368 12 692 332 1008 652 684 640 668 [[An_initial_path_towards_statistical_analysis#Ordinations|]] | poly 328 368 12 692 332 1008 652 684 640 668 [[An_initial_path_towards_statistical_analysis#Ordinations|]] | ||
poly 1068 364 744 680 1064 1012 1376 688 1368 676 [[An_initial_path_towards_statistical_analysis#Cluster_analysis|]] | poly 1068 364 744 680 1064 1012 1376 688 1368 676 [[An_initial_path_towards_statistical_analysis#Cluster_analysis|]] | ||
| Line 161: | Line 161: | ||
'''DIFFERENCE BETWEEN SUPERVISED AND UNSUPERVISED?? DISTINCTION NOT MADE IN THE [[Clustering Methods|CLUSTERING ENTRY]] | '''DIFFERENCE BETWEEN SUPERVISED AND UNSUPERVISED?? DISTINCTION NOT MADE IN THE [[Clustering Methods|CLUSTERING ENTRY]] | ||
''' | ''' | ||
| − | <imagemap>Image:Statistics Flowchart - Cluster Analysis.png| | + | <imagemap>Image:Statistics Flowchart - Cluster Analysis.png|500px|center| |
poly 336 372 8 688 328 1000 640 688 [[Clustering_Methods|Supervised Classification]] | poly 336 372 8 688 328 1000 640 688 [[Clustering_Methods|Supervised Classification]] | ||
poly 1068 376 744 680 1064 1000 1368 696 [[Clustering_Methods|Unsupervised Classification]] | poly 1068 376 744 680 1064 1000 1368 696 [[Clustering_Methods|Unsupervised Classification]] | ||
| Line 180: | Line 180: | ||
== Network analysis == | == Network analysis == | ||
| − | <imagemap>Image:Statistics Flowchart - Network Analysis.png|center| | + | <imagemap>Image:Statistics Flowchart - Network Analysis.png|center|500px| |
poly 336 364 4 684 340 1000 644 692 632 676 [[Bipartite|Big problems for later|]] | poly 336 364 4 684 340 1000 644 692 632 676 [[Bipartite|Big problems for later|]] | ||
poly 1064 372 732 696 1060 1004 1372 688 [[Tripartite|Big problems for later]] | poly 1064 372 732 696 1060 1004 1372 688 [[Tripartite|Big problems for later]] | ||
| Line 199: | Line 199: | ||
== Ordinations == | == Ordinations == | ||
| − | <imagemap>Image:Statistics Flowchart - Ordination.png| | + | <imagemap>Image:Statistics Flowchart - Ordination.png|500px|center| |
poly 332 372 8 692 328 1008 644 688 [[Big problems for later|Euclidean distances]] | poly 332 372 8 692 328 1008 644 688 [[Big problems for later|Euclidean distances]] | ||
poly 1064 368 748 684 1060 996 1372 692 1372 692 [[Big problems for later|Jaccard distances]] | poly 1064 368 748 684 1060 996 1372 692 1372 692 [[Big problems for later|Jaccard distances]] | ||
Revision as of 08:37, 10 March 2021
Start here with your data! This is your first question.
Error: Image is invalid or non-existent.
Do you have several continuous variables without clear dependencies? (?)
Yes, I have several continuous variables without clear dependencies!
No, my variables have clear dependencies!
R commands: str, summary, head, tail
Example: Inspecting the swiss dataset
Contents
Univariate statistics
Does you data contain at least one categorical variable?
Yes, my data contains at least one categorical variable?
No, my data contains only continuous variables?
No, my variables have clear dependencies!
R commands: str, summary, head, tail, ordered(dataset$variablename, c(levels = “level1”, level2”...))
Relevant figures: hist(), boxplot()
Categorical variables
Does you data contain only categorical variables?
Yes, my data contain only categorical variables?
No, my data does contains continuous and categorical variables?
Chi-Square test
R commands: table, chisq.test( x, correct=TRUE)
Relevant figures: (stacked) bar charts : barplot(), pie(), bipartite
Categorical and continuous data
R commands: quantile(), str, summary,
Does you categorical dependent variables have 1-2 factor levels?
Yes, my categorical dependent variables has 1-2 factor levels!
No, my categorical dependent variables more than 2 factor levels!
t-test
R commands: t.test, t_test Relevant figures:
Analysis of Variance
R commands: aov, Anova, ezAnova, var.test(), lm
Relevant figures: boxplot()
Is your dependent variable normally distributed?
R commands: ks.test, shapiro.test, hist
Yes, my dependent variable is normally distributed!
No, my dependent variable is binomial distributed!
No, my dependent variable is Poisson distributed!
Gaussian Anova
R commands: aov, lm
Relevant figures: boxplot
Is your dependent variable binomial or Poisson
Dependent variable is count data
R commands: glm,
Relevant figures: plot
Dependent variable is 0/1 or proportions
R commands:
Relevant figures:
Type III Anova
R commands: Anova(car)
Relevant figures: boxplot
Dependent variable not normally distributed
Dependent variable is count data
R commands: glm
Relevant figures: plot
Dependent variable is 0/1 or proportions
R commands: glm
Relevant figures:
Are there random factor variables?
Random factors
R commands: glmer, glmmPQL
Relevant figures:
Continuous variables
Non dependent relations?
Correlations
Clear dependent relations
Regression models
Dependent variable normally distributed
Linear Regression
Dependent variable not normally distributed
Generalised linear model
Dependent variable is count data
Dependent variable is 0/1 or proportions
R commands:
Relevant figures:
Multivariate statistics
R commands:
Relevant figures:
Data is classified into groups
R commands:
Relevant figures:
Cluster analysis
DIFFERENCE BETWEEN SUPERVISED AND UNSUPERVISED?? DISTINCTION NOT MADE IN THE CLUSTERING ENTRY
R commands:
Relevant figures:
Supervised classification
R commands:
Relevant figures:
Unsupervised classification
R commands:
Relevant figures:
Network analysis
R commands:
Relevant figures:
Bipartite
R commands: is_bipartite(graph)
Relevant figures: make_bipartite_graph(types, edges, directed = FALSE)
Tripartite
R commands:
Relevant figures:
Ordinations
R commands:
Relevant figures:
Linear based ordinations
R commands:
Relevant figures:
Correspondance analysis
R commands:
Relevant figures:
Is your dependent variable normally distributed?
Is your dependent variable not normally distributed?
Does your independent variable contain only 1 or 2 groups?
Does your independent variable contain more than 2 groups?
Is your dependent variable normally distributed?
Is your dependent variable not normally distributed?
Resterampe
[[At least one continuous and one categorical variable|
More than 2 groups
Analysis of Variance
Dependent variable normally distributed
INSERT TYPE II
INSERT RANDOM FACTOR
INSERT LMM
Dependent variable not normally distributed
Dependent variable is count data
Dependent variable is 0/1 or proportions
